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- MOLECULES 12/94
- 3D Structure Data Files
-
- Acids & Bases (11 models)
-
- file name formula chemical name
-
- acetate.m3d CH3COO- acetate anion
- aceticac.m3d CH3COOH acetic acid
- ammonia.m3d NH3 ammonia
- edtamg.m3d MgC10H12O8N2 EDTA magnesium
- formicac.m3d CH2O2 formic acid
- nitricac.m3d HNO3 nitric acid
- oxalicac.m3d C2H2O4 oxalic acid
- palmacid.m3d C16H32O2 palmitic acid
- phosac.m3d H3PO4 phosphoric acid
- sulfurac.m3d SO4H2 sulfuric acid
- uricacid.m3d C5H4N4O3 uric acid
-
- Biological (33 models)
-
- file name formula chemical name
-
- adenine.m3d C5H5N5 adenine
- adenosin.m3d C10H13N5O4 adenosine
- aflatoxn.m3d C17H12O6 aflatoxin
- amp.m3d C10H14N5O7P AMP; adenosine monophosphate
- asorbica.m3d C6H8O6 ascorbic acid (Vitamin C)
- asparagn.m3d C4H8O3N2 asparagine
- aspartam.m3d C13H16O5N2 aspartame (Nutrasweet)
- aspirin.m3d C9H8O4 aspirin
- atp.m3d C10H13O13N5P3 ATP; adenosine triphosphate
- atropine.m3d C16H21NO3 atropine
- b-carotn.m3d C40H56 beta carotene
- caffeine.m3d C8H10N4O2 caffeine
- camphor.m3d C10H16O camphor
- celulose.m3d (C6H10O5)n p(1,4'-O-B-D-glucose); cellulose
- cholstrl.m3d C27H46O cholesterol
- fructosb.m3d C6H12O6 beta fructose
- glucosa.m3d C6H12O6 alpha glucose
- glucosb.m3d C6H12O6 beta glucose
- histidin.m3d C6H9O2N3 histidine
- niacin.m3d C6H5O2N niacin
- nicotine.m3d C10H14N2 nicotine
- porphyrn.m3d C34H34O4N4 porphyrin
- progestr.m3d C21H30O2 progesterone
- ribose.m3d C5H10O5 ribose
- saccharn.m3d C7H5NO3S saccharin
- sucrose.m3d C12H22O11 sucrose
- taxol.m3d C47H51NO13 taxol
- testostr.m3d C19H28O2 testosterone
- urea.m3d CH4N2O urea
- vitamina.m3d C20H30O vitamin a (retinol)
- vitamind.m3d C27H44O2 vitamin d
- vitamine.m3d C29H50O2 vitamin e
- vitamink.m3d C31H46O2 vitamin k
-
- CRYSTALS (7 models)
-
- file name formula crystal
-
- beryl.m3d Si6O18 beryl metasilicate network
- diamond.m3d C diamond
- fe.m3d Fe iron
- graphite.m3d C graphite
- ice.m3d H2O water (solid phase)
- nacl.m3d NaCl sodium chloride
- sio2 SiO2 silicon dioxide
-
- Hydrocarbons (31 models)
-
- file name formula chemical name
-
- acetylen.m3d C2H2 acetylene (ethyne)
- adamant.m3d C10H16 adamantane
- anthrace.m3d C14H10 anthracene
- benzene.m3d C6H6 benzene (w/ double bonds)
- benzene2.m3d C6H6 benzene (w/ resonant bonds)
- buckybal.m3d C60 buckminsterfullerene
- butadien.m3d C4H6 butadiene
- butane.m3d C4H10 butane
- cubane.m3d C8H8 cubane
- cumene.m3d C9H12 cumene (isopropylbenzene)
- cybutane.m3d C4H8 cyclobutane
- cyhexanb.m3d C6H12 cyclohexane ("boat" config.)
- cyhexanc.m3d C6H12 cyclohexane ("chair" congif.)
- cymene-p.m3d C10H14 cymeme
- cypentan.m3d C5H10 cyclopentane
- cypenten.m3d C5H8 cyclopentene
- cypropan.m3d C3H6 cyclopropane
- ethane.m3d C2H6 ethane
- ethene.m3d C2H4 ethene
- isobuten.m3d C4H8 isobutene
- mesityln.m3d C9H9 mesitylene
- methane.m3d CH4 methane
- p-ethyln.m3d (C2H4)n polyethylene
- p-styren.m3d (C8H8)n polystyrene
- pentane.m3d C5H12 pentane
- propane.m3d C3H8 propane
- propene.m3d C3H6 propene
- toluene.m3d C7H8 toluene
- xylene-m.m3d C8H10 meta-xylene
- xylene-o.m3d C8H10 ortho-xylene
- xylene-p.m3d C8H10 para-xylene
-
- Organics (17 models)
-
- file name formula chemical name
-
- 18c6.m3d C12H24O6 18 crown 6
- 1metamin.m3d CH5N methylamine
- 2metamin.m3d C2H7N dimethylamine
- 3metamin.m3d C3H9N trimethylamine
- acetone.m3d C3H6O acetone
- acriloni.m3d C3H3N acrylonitrile
- actldhyd.m3d C2H4O acetaldehyde
- db18crn6.m3d C20H24O6 dibenzene 18 crown 6
- ethanol.m3d C2H6O ethanol
- ethgly.m3d C2H6O2 ethylene glycol
- ethylnox.m3d C2H4O ethylene oxide
- formaldh.m3d CH2O formaldehyde
- meketone.m3d C4H8O methyl ethyl ketone (2-butanone)
- methanol.m3d CH4O methanol
- mtbe.m3d C5H12O methyl tert-butyl ether
- thiazoln.m3d C3H3OSN 4-thiazolone
- tnt.m3d C7H5N3O6 trinitrotoluene
-
-
-
-
- FRAGMENTS (18 models)
-
- file name formula fragment name
-
- adenine.frg C5H4N5-R adenine
- adipac.frg R-C6H9O3 adipac
- alcohol.frg R-CH2OH alcohol
- aldehyde.ftg R-COH aldehyde
- amide.frg R-CONH2 amide
- benzene.frg R6-C6 benzene (double bonded)
- benzene2.frg R6-C6 benzene (resonant)
- carboxyl.frg R-COOH carboxyl
- cbutane.frg R8-C4 cyclobutane
- chexan-b.frg R12-C6 cyclohexane ("boat")
- chexan-c.frg R12-C6 cyclohexane ("chair")
- ethyl.frg R-C2H5 ethyl
- fructos.frg C6H11O6-R fructose
- hmdam.frg R-NHC6H12NH2 hexanediamine
- melamin.frg R-C6H10N7 melamin
- methyl.frg R-CH3 methyl
- propyl.frg R-C3H7 propyl
- styrene.frg C6H5-C2-R5 styrene
-
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-
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-
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